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C

calculate(IAtomContainer) - Method in class chemCast.similarity.data.ChemCastDescriptor
 
centerScreen(Component) - Method in class chemCast.ui.wizard.WizardWrapper
 
chartMouseClicked(ChartMouseEvent) - Method in class chemCast.ui.MyChart
 
chartMouseClicked(ChartMouseEvent) - Method in class chemCast.ui.SimilarityResultViewer
 
chartMouseMoved(ChartMouseEvent) - Method in class chemCast.ui.MyChart
 
chartMouseMoved(ChartMouseEvent) - Method in class chemCast.ui.SimilarityResultViewer
 
chemCast.application - package chemCast.application
 
chemCast.data - package chemCast.data
 
chemCast.events - package chemCast.events
 
chemCast.exception - package chemCast.exception
 
chemCast.similarity.data - package chemCast.similarity.data
 
chemCast.test - package chemCast.test
 
chemCast.test.data - package chemCast.test.data
 
chemCast.test.ui - package chemCast.test.ui
 
chemCast.test.weka - package chemCast.test.weka
 
chemCast.ui - package chemCast.ui
 
chemCast.ui.actions - package chemCast.ui.actions
 
chemCast.ui.wizard - package chemCast.ui.wizard
 
chemCast.weka - package chemCast.weka
 
ChemCASTAction - Class in chemCast.ui.actions
 
ChemCASTAction(ChemCASTModule, JFrame, int) - Constructor for class chemCast.ui.actions.ChemCASTAction
 
ChemCASTAction(ChemCASTModule, JFrame, String, int) - Constructor for class chemCast.ui.actions.ChemCASTAction
 
ChemCASTAction(ChemCASTModule, JFrame, String, Icon, int) - Constructor for class chemCast.ui.actions.ChemCASTAction
 
ChemCastDescriptor - Class in chemCast.similarity.data
 
ChemCastDescriptor(String, LiteratureEntry) - Constructor for class chemCast.similarity.data.ChemCastDescriptor
 
ChemCastDescriptor(String, int, LiteratureEntry) - Constructor for class chemCast.similarity.data.ChemCastDescriptor
 
ChemCastDescriptor(String, int, int, LiteratureEntry) - Constructor for class chemCast.similarity.data.ChemCastDescriptor
 
ChemCastDescriptorsList - Class in chemCast.similarity.data
 
ChemCastDescriptorsList(Element) - Constructor for class chemCast.similarity.data.ChemCastDescriptorsList
 
ChemCastDescriptorsList() - Constructor for class chemCast.similarity.data.ChemCastDescriptorsList
 
ChemCastDescriptorTest - Class in chemCast.test.data
 
ChemCastDescriptorTest(String) - Constructor for class chemCast.test.data.ChemCastDescriptorTest
 
ChemCastListTableModel - Class in chemCast.ui
 
ChemCastListTableModel(IChemCastList) - Constructor for class chemCast.ui.ChemCastListTableModel
 
ChemCASTModule - Class in chemCast.application
 
ChemCASTModule() - Constructor for class chemCast.application.ChemCASTModule
 
ChemCASTModuleTest - Class in chemCast.test.data
 
ChemCASTModuleTest() - Constructor for class chemCast.test.data.ChemCASTModuleTest
 
ChemCastObject - Class in chemCast.similarity.data
 
ChemCastObject(Element) - Constructor for class chemCast.similarity.data.ChemCastObject
 
ChemCastObject() - Constructor for class chemCast.similarity.data.ChemCastObject
 
ChemCastObjectFactory - Class in chemCast.similarity.data
 
ChemCastObjectFactory() - Constructor for class chemCast.similarity.data.ChemCastObjectFactory
 
ChemCastWizardPanelDescriptor - Class in chemCast.ui.wizard
 
ChemCastWizardPanelDescriptor(Object, Object, Object, JComponent, ImageIcon) - Constructor for class chemCast.ui.wizard.ChemCastWizardPanelDescriptor
 
clear() - Method in class chemCast.similarity.data.ChemCastDescriptorsList
 
clear() - Method in class chemCast.similarity.data.ChemCastObject
 
clear() - Method in class chemCast.similarity.data.Dataset
 
clear() - Method in class chemCast.similarity.data.Endpoints
 
clear() - Method in class chemCast.similarity.data.SimilarityDefs
 
clear() - Method in class chemCast.similarity.data.SimilarityModel
 
clear() - Method in class chemCast.similarity.data.SimilaritySubsets
 
clear() - Method in class chemCast.similarity.data.Subsets
 
clear() - Method in class chemCast.similarity.data.SubsetSimilarityMatrix
 
clearAvailableProperties() - Method in class chemCast.data.FilteredMoleculesFile
 
clearAvailableProperties() - Method in class chemCast.data.MoleculesFile
 
clickRow(JTable, int) - Method in class chemCast.ui.ListPanel
 
close() - Method in class chemCast.application.ChemCASTModule
 
close() - Method in class chemCast.data.FilteredMoleculesFile
 
close() - Method in class chemCast.data.MoleculesFile
 
close() - Method in class chemCast.similarity.data.AtomEnvironmentSimilarity
 
close() - Method in class chemCast.similarity.data.ChemCastDescriptorsList
 
Color2Hex(Color) - Static method in class chemCast.similarity.data.Dataset
 
compareTo(Object) - Method in class chemCast.similarity.data.ChemCastDescriptorsList
 
compareTo(Object) - Method in class chemCast.similarity.data.DatasetDef
 
compareTo(Object) - Method in class chemCast.similarity.data.Endpoint
 
compareTo(Object) - Method in class chemCast.similarity.data.Endpoints
 
compareTo(Object) - Method in class chemCast.similarity.data.SimilarityDef
 
compareTo(Object) - Method in class chemCast.similarity.data.SimilarityDefs
 
compareTo(Object) - Method in class chemCast.similarity.data.Subset
 
compareTo(Object) - Method in class chemCast.similarity.data.Subsets
 
CompoundsListReport - Class in chemCast.ui
TODO add description
CompoundsListReport(RandomAccessFileTableModel, String) - Constructor for class chemCast.ui.CompoundsListReport
 
conditions - Static variable in class chemCast.data.PairwiseSimilarityFilter
 
ConfigAction - Class in chemCast.ui.actions
 
ConfigAction() - Constructor for class chemCast.ui.actions.ConfigAction
 
ConfigTest - Class in chemCast.test
 
ConfigTest() - Constructor for class chemCast.test.ConfigTest
 
ConfigTree - Class in chemCast.ui
Config file editor
ConfigTree() - Constructor for class chemCast.ui.ConfigTree
 
ConfiguredTrainingSetOpenAction - Class in chemCast.ui.actions
 
ConfiguredTrainingSetOpenAction(ChemCASTModule, JFrame, int) - Constructor for class chemCast.ui.actions.ConfiguredTrainingSetOpenAction
 
ConfiguredTrainingSetOpenAction(ChemCASTModule, JFrame, String, int) - Constructor for class chemCast.ui.actions.ConfiguredTrainingSetOpenAction
 
ConfiguredTrainingSetOpenAction(ChemCASTModule, JFrame, String, Icon, int) - Constructor for class chemCast.ui.actions.ConfiguredTrainingSetOpenAction
 
CosineSimilarity - Class in chemCast.weka
1-(Cosine similarity).
Cosine similarity is Cab=Zab/Math.sqrt(Zaa*Zbb).
CosineSimilarity() - Constructor for class chemCast.weka.CosineSimilarity
 
CosineSimilarity(Instances) - Constructor for class chemCast.weka.CosineSimilarity
 
CosineSimilarityTest - Class in chemCast.test.weka
JUnits test for CosineSimilarity}
CosineSimilarityTest(String) - Constructor for class chemCast.test.weka.CosineSimilarityTest
 
createButtons(List<?>, List<JRadioButton>, int) - Method in class chemCast.ui.RadioBoxPanel
 
createColumnModel(List<? extends IChemCastObject>) - Static method in class chemCast.ui.ListPanel
 
createData(IReaderListener, PropertyTranslator) - Method in class chemCast.similarity.data.DatasetDef
 
createData(IAtomContainersList, IObjectFilter) - Method in class chemCast.similarity.data.Subset
 
createFilter() - Method in class chemCast.similarity.data.Subset
 
createGraph() - Static method in class chemCast.ui.HyperGraphSimilarityPanel
 
createInstance() - Method in class chemCast.weka.Subsets2Instances
 
createInstances(String) - Method in class chemCast.weka.Subsets2Instances
 
createNew() - Method in class chemCast.similarity.data.Subsets
 
createNewSubset(Subset, IObjectFilter) - Method in class chemCast.similarity.data.Subsets
Same as addnewsubset, but does not add to the list.
createPanels() - Method in class chemCast.ui.wizard.SubsetWizard
 
createProcessor() - Static method in class chemCast.data.BatchDescriptorImporter
 
createReader(File, IChemObjectBuilder, IReaderListener) - Method in class chemCast.data.MoleculesFile
 
createResult() - Method in class chemCast.similarity.data.ChemCastDescriptorsList
 
createSimilarityProcessor() - Method in class chemCast.similarity.data.SimilarityDef
 
createSimilarityProcessor() - Method in class chemCast.similarity.data.SimilarityModel
 
CreateSubsetAction - Class in chemCast.ui.actions
 
CreateSubsetAction(ChemCASTModule, JFrame, int) - Constructor for class chemCast.ui.actions.CreateSubsetAction
 
CreateSubsetAction(ChemCASTModule, JFrame, String, int) - Constructor for class chemCast.ui.actions.CreateSubsetAction
 
CreateSubsetAction(ChemCASTModule, JFrame, String, Icon, int) - Constructor for class chemCast.ui.actions.CreateSubsetAction
 
createSubsets(DatasetDef, Subsets) - Method in class chemCast.similarity.data.SimilaritySubsets
 
createSubsets(IAtomContainersList, Subsets) - Method in class chemCast.similarity.data.Subsets
 
createTestDatasetActions(ActionMap, JFrame) - Method in class chemCast.application.ChemCASTModule
 
createWizard(Endpoints) - Method in class chemCast.test.ConfigTest
 

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